Package: kmeRs 2.1.0

Rafal Urniaz

kmeRs: K-Mers Similarity Score Matrix and HeatMap

Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.

Authors:Rafal Urniaz [aut, cre], Jason Lin [ctb]

kmeRs_2.1.0.tar.gz
kmeRs_2.1.0.zip(r-4.5)kmeRs_2.1.0.zip(r-4.4)
kmeRs_2.1.0.tgz(r-4.4-any)
kmeRs_2.1.0.tar.gz(r-4.5-noble)kmeRs_2.1.0.tar.gz(r-4.4-noble)
kmeRs_2.1.0.tgz(r-4.4-emscripten)
kmeRs.pdf |kmeRs.html✨
kmeRs/json (API)
NEWS

# Install 'kmeRs' in R:
install.packages('kmeRs', repos = c('https://urniaz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/urniaz/kmers/issues

On CRAN:

softwareamino-acidsbioinformaticsnucleic-acidssimilarity-matrix

4.54 score 3 scripts 175 downloads 6 exports 19 dependencies

Last updated 3 months agofrom:d4533fa8b5. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winOKOct 26 2024
R-4.5-linuxOKOct 26 2024
R-4.4-winOKOct 26 2024
R-4.4-macOKOct 26 2024

Exports:kmeRs_heatmapkmeRs_scorekmeRs_show_alignmentkmeRs_similarity_matrixkmeRs_statisticskmeRs_transcript_to_complementary

Dependencies:askpassBiocGenericsBiostringscrayoncurlGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpwalignR6S4VectorssysUCSC.utilsXVectorzlibbioc

Introduction to the kmeRs package

Rafal Urniaz, PhD^[OncoCDx Research Center, London, UK]

Rendered fromIntroduction_to_kmeRs_package.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-07-15
Started: 2018-10-28