Package: kmeRs 2.1.0

Rafal Urniaz

kmeRs: K-Mers Similarity Score Matrix and HeatMap

Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.

Authors:Rafal Urniaz [aut, cre], Jason Lin [ctb]

kmeRs_2.1.0.tar.gz
kmeRs_2.1.0.zip(r-4.5)kmeRs_2.1.0.zip(r-4.4)
kmeRs_2.1.0.tgz(r-4.4-any)
kmeRs_2.1.0.tar.gz(r-4.5-noble)kmeRs_2.1.0.tar.gz(r-4.4-noble)
kmeRs_2.1.0.tgz(r-4.4-emscripten)
kmeRs.pdf |kmeRs.html✨
kmeRs/json (API)
NEWS

# Install 'kmeRs' in R:
install.packages('kmeRs', repos = c('https://urniaz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/urniaz/kmers/issues

On CRAN:

amino-acidsbioinformaticsnucleic-acidssimilarity-matrix

6 exports 1.25 score 19 dependencies 4 scripts 190 downloads

Last updated 22 days agofrom:d4533fa8b5. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 27 2024
R-4.5-winOKAug 27 2024
R-4.5-linuxOKAug 27 2024
R-4.4-winOKAug 27 2024
R-4.4-macOKAug 27 2024

Exports:kmeRs_heatmapkmeRs_scorekmeRs_show_alignmentkmeRs_similarity_matrixkmeRs_statisticskmeRs_transcript_to_complementary

Dependencies:askpassBiocGenericsBiostringscrayoncurlGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpwalignR6S4VectorssysUCSC.utilsXVectorzlibbioc

Introduction to the kmeRs package

Rafal Urniaz, PhD^[OncoCDx Research Center, London, UK]

Rendered fromIntroduction_to_kmeRs_package.Rmdusingknitr::rmarkdownon Aug 27 2024.

Last update: 2024-07-15
Started: 2018-10-28