Package: kmeRs 2.1.0

Rafal Urniaz

kmeRs: K-Mers Similarity Score Matrix and HeatMap

Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.

Authors:Rafal Urniaz [aut, cre], Jason Lin [ctb]

kmeRs_2.1.0.tar.gz
kmeRs_2.1.0.zip(r-4.5)kmeRs_2.1.0.zip(r-4.4)
kmeRs_2.1.0.tgz(r-4.5-any)kmeRs_2.1.0.tgz(r-4.4-any)
kmeRs_2.1.0.tar.gz(r-4.5-noble)kmeRs_2.1.0.tar.gz(r-4.4-noble)
kmeRs_2.1.0.tgz(r-4.4-emscripten)
kmeRs.pdf |kmeRs.html✨
kmeRs/json (API)
NEWS

# Install 'kmeRs' in R:
install.packages('kmeRs', repos = c('https://urniaz.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/urniaz/kmers/issues

On CRAN:

Conda:

softwareamino-acidsbioinformaticsnucleic-acidssimilarity-matrix

4.54 score 3 scripts 94 downloads 6 exports 19 dependencies

Last updated 7 months agofrom:d4533fa8b5. Checks:5 OK, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 25 2025
R-4.5-winERRORMar 25 2025
R-4.5-macERRORMar 25 2025
R-4.5-linuxOKMar 25 2025
R-4.4-winOKMar 25 2025
R-4.4-macOKMar 25 2025
R-4.4-linuxOKMar 25 2025

Exports:kmeRs_heatmapkmeRs_scorekmeRs_show_alignmentkmeRs_similarity_matrixkmeRs_statisticskmeRs_transcript_to_complementary

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpwalignR6S4VectorssysUCSC.utilsXVector

Introduction to the kmeRs package

Rafal Urniaz, PhD^[OncoCDx Research Center, London, UK]

Rendered fromIntroduction_to_kmeRs_package.Rmdusingknitr::rmarkdownon Mar 25 2025.

Last update: 2024-07-15
Started: 2018-10-28